IL_9KZU_088
3D structure
- PDB id
- 9KZU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 9KZU|1|L5|A|2512, 9KZU|1|L5|A|2513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9KZU_088 not in the Motif Atlas
- Homologous match to IL_9PN5_062
- Geometric discrepancy: 0.1013
- The information below is about IL_9PN5_062
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.4
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
9KZU|1|L5|C|2446
9KZU|1|L5|U|2447
9KZU|1|L5|G|2448
9KZU|1|L5|A|2449
9KZU|1|L5|G|2450
*
9KZU|1|L5|C|2509
9KZU|1|L5|G|2510
9KZU|1|L5|A|2511
9KZU|1|L5|A|2512
9KZU|1|L5|A|2513
9KZU|1|L5|G|2514
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain Lg
- 60S ribosomal protein L34
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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