IL_9KZU_105

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

9KZU|1|L5|G|2903, 9KZU|1|L5|U|3595, 9KZU|1|L5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|G|2901
9KZU|1|L5|G|2902
9KZU|1|L5|G|2903
9KZU|1|L5|U|2904
9KZU|1|L5|C|2905
*
9KZU|1|L5|G|3589
9KZU|1|L5|G|3590
9KZU|1|L5|C|3591
9KZU|1|L5|G|3592
9KZU|1|L5|C|3593
9KZU|1|L5|C|3594
9KZU|1|L5|U|3595
9KZU|1|L5|A|3596
9KZU|1|L5|G|3597
9KZU|1|L5|C|3598

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain 3c

Eukaryotic translation initiation factor 3 subunit C

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11