IL_9KZU_113

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9KZU|1|L5|A|3785, 9KZU|1|L5|C|3791, 9KZU|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|C|3781
9KZU|1|L5|C|3782
9KZU|1|L5|A|3783
9KZU|1|L5|A|3784
9KZU|1|L5|A|3785
9KZU|1|L5|U|3786
9KZU|1|L5|G|3787
9KZU|1|L5|C|3788
9KZU|1|L5|C|3789
9KZU|1|L5|U|3790
9KZU|1|L5|C|3791
9KZU|1|L5|G|3792
*
9KZU|1|L5|C|3808
9KZU|1|L5|G|3809
9KZU|1|L5|C|3810
9KZU|1|L5|G|3811

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA