IL_9KZU_119

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAGGC*GCUC

Length

11 nucleotides

Bulged bases

9KZU|1|L5|G|4084, 9KZU|1|L5|G|4086, 9KZU|1|L5|G|4087, 9KZU|1|L5|C|4162, 9KZU|1|L5|U|4163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|L5|G|4082
9KZU|1|L5|U|4083
9KZU|1|L5|G|4084
9KZU|1|L5|A|4085
9KZU|1|L5|G|4086
9KZU|1|L5|G|4087
9KZU|1|L5|C|4088
*
9KZU|1|L5|G|4161
9KZU|1|L5|C|4162
9KZU|1|L5|U|4163
9KZU|1|L5|C|4164

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LX

60S ribosomal protein L23a