IL_9KZU_161

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCG*CGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KZU_161 not in the Motif Atlas

Homologous match to IL_7A0S_104

Geometric discrepancy: 0.4966

The information below is about IL_7A0S_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05192.7

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9KZU|1|L7|C|28
9KZU|1|L7|C|29
9KZU|1|L7|C|30
9KZU|1|L7|G|31
*
9KZU|1|L7|C|46
9KZU|1|L7|G|47
9KZU|1|L7|G|48
9KZU|1|L7|A|49
9KZU|1|L7|A|50
9KZU|1|L7|G|51

Current chains

Chain L7

5S_ribosomal_RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LJ

60S ribosomal protein L11