IL_9KZU_208

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|S2|C|927
9KZU|1|S2|G|928
9KZU|1|S2|G|929
9KZU|1|S2|C|930
9KZU|1|S2|C|931
*
9KZU|1|S2|G|1010
9KZU|1|S2|A|1011
9KZU|1|S2|A|1012
9KZU|1|S2|U|1013
9KZU|1|S2|G|1014

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Lc

60S ribosomal protein L30

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain Sb

40S ribosomal protein S27