IL_9KZU_237
3D structure
- PDB id
- 9KZU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 9KZU|1|S2|G|1552, 9KZU|1|S2|C|1553, 9KZU|1|S2|C|1554, 9KZU|1|S2|U|1555, 9KZU|1|S2|A|1556, 9KZU|1|S2|C|1557, 9KZU|1|S2|A|1580, 9KZU|1|S2|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KZU|1|S2|G|1550
9KZU|1|S2|U|1551
9KZU|1|S2|G|1552
9KZU|1|S2|C|1553
9KZU|1|S2|C|1554
9KZU|1|S2|U|1555
9KZU|1|S2|A|1556
9KZU|1|S2|C|1557
9KZU|1|S2|C|1558
*
9KZU|1|S2|G|1577
9KZU|1|S2|U|1578
9KZU|1|S2|A|1579
9KZU|1|S2|A|1580
9KZU|1|S2|C|1581
9KZU|1|S2|C|1582
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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