IL_9KZU_260

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGACCGG*CGCUCAAUG

Length

16 nucleotides

Bulged bases

9KZU|1|zz|U|216

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|zz|C|183
9KZU|1|zz|G|184
9KZU|1|zz|A|185
9KZU|1|zz|C|186
9KZU|1|zz|C|187
9KZU|1|zz|G|188
9KZU|1|zz|G|189
*
9KZU|1|zz|C|209
9KZU|1|zz|G|210
9KZU|1|zz|C|211
9KZU|1|zz|U|212
9KZU|1|zz|C|213
9KZU|1|zz|A|214
9KZU|1|zz|A|215
9KZU|1|zz|U|216
9KZU|1|zz|G|217

Current chains

Chain zz

HCV IRES

Nearby chains

Chain 3a

Eukaryotic translation initiation factor 3 subunit A