IL_9KZU_261

3D structure

PDB id

9KZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZU|1|zz|C|255
9KZU|1|zz|G|256
9KZU|1|zz|A|257
9KZU|1|zz|G|258
9KZU|1|zz|U|259
9KZU|1|zz|A|260
9KZU|1|zz|G|261
*
9KZU|1|zz|C|272
9KZU|1|zz|G|273
9KZU|1|zz|A|274
9KZU|1|zz|A|275
9KZU|1|zz|A|276
9KZU|1|zz|G|277

Current chains

Chain zz

HCV IRES

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA