IL_9KZX_081

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9KZX|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KZX_081 not in the Motif Atlas

Homologous match to IL_8GLP_082

Geometric discrepancy: 0.4269

The information below is about IL_8GLP_082

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.4

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

5

Unit IDs

9KZX|1|L5|U|1957
9KZX|1|L5|A|1958
9KZX|1|L5|U|1959
9KZX|1|L5|A|1960
9KZX|1|L5|G|1961
9KZX|1|L5|A|1962
9KZX|1|L5|C|1963
9KZX|1|L5|A|1964
9KZX|1|L5|G|1965
*
9KZX|1|L5|C|2022
9KZX|1|L5|C|2023
9KZX|1|L5|G|2024
9KZX|1|L5|A|2025
9KZX|1|L5|A|2026

Current chains

Chain L5

28S ribosomal RNA

Nearby chains