IL_9KZX_117

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9KZX|1|L5|A|3785, 9KZX|1|L5|C|3791, 9KZX|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|C|3781
9KZX|1|L5|C|3782
9KZX|1|L5|A|3783
9KZX|1|L5|A|3784
9KZX|1|L5|A|3785
9KZX|1|L5|U|3786
9KZX|1|L5|G|3787
9KZX|1|L5|C|3788
9KZX|1|L5|C|3789
9KZX|1|L5|U|3790
9KZX|1|L5|C|3791
9KZX|1|L5|G|3792
*
9KZX|1|L5|C|3808
9KZX|1|L5|G|3809
9KZX|1|L5|C|3810
9KZX|1|L5|G|3811

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain zy

Transfer RNA; tRNA