IL_9KZX_125

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

9KZX|1|L5|U|4265, 9KZX|1|L5|G|4266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KZX_125 not in the Motif Atlas

Homologous match to IL_9PN5_095

Geometric discrepancy: 0.429

The information below is about IL_9PN5_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14250.4

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

12

Unit IDs

9KZX|1|L5|C|4243
9KZX|1|L5|A|4244
9KZX|1|L5|G|4245
*
9KZX|1|L5|C|4263
9KZX|1|L5|G|4264
9KZX|1|L5|U|4265
9KZX|1|L5|G|4266
9KZX|1|L5|G|4267

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LJ

60S ribosomal protein L11

Chain LT

60S ribosomal protein L21