IL_9KZX_146

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

9KZX|1|L5|U|4634, 9KZX|1|L5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KZX_146 not in the Motif Atlas

Homologous match to IL_8GLP_318

Geometric discrepancy: 0.2073

The information below is about IL_8GLP_318

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43276.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

5

Unit IDs

9KZX|1|L5|U|4632
9KZX|1|L5|G|4633
9KZX|1|L5|U|4634
9KZX|1|L5|A|4635
9KZX|1|L5|U|4636
9KZX|1|L5|G|4637
*
9KZX|1|L5|C|4662
9KZX|1|L5|G|4663
9KZX|1|L5|A|4664
9KZX|1|L5|A|4665
9KZX|1|L5|G|4666

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31