IL_9KZX_188

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9KZX|1|S2|U|361, 9KZX|1|S2|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|S2|U|359
9KZX|1|S2|A|360
9KZX|1|S2|U|361
9KZX|1|S2|C|362
9KZX|1|S2|A|363
9KZX|1|S2|A|364
*
9KZX|1|S2|U|396
9KZX|1|S2|G|397
9KZX|1|S2|A|398
9KZX|1|S2|C|399
9KZX|1|S2|C|400
9KZX|1|S2|A|401
9KZX|1|S2|C|402
9KZX|1|S2|G|403

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11

Chain SX

40S ribosomal protein S23