IL_9KZX_235

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

9KZX|1|S2|U|1397

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|S2|C|1395
9KZX|1|S2|A|1396
9KZX|1|S2|U|1397
9KZX|1|S2|G|1398
9KZX|1|S2|C|1399
*
9KZX|1|S2|G|1447
9KZX|1|S2|A|1448
9KZX|1|S2|G|1449
9KZX|1|S2|G|1450

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SR

40S ribosomal protein S17

Chain SU

40S ribosomal protein S20

Chain Sg

Receptor of activated protein C kinase 1