IL_9L0R_020

3D structure

PDB id

9L0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA dodecamer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9L0R_020 not in the Motif Atlas

Geometric match to IL_8C3A_460

Geometric discrepancy: 0.2652

The information below is about IL_8C3A_460

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58310.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9L0R|1|B|C|155
9L0R|1|B|A|156
9L0R|1|B|G|157
*
9L0R|1|B|C|165
9L0R|1|B|G|166

Current chains

Chain B

RNA (700-MER)

Nearby chains

Chain L

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA