IL_9L0R_029

3D structure

PDB id

9L0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA dodecamer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

AGAG*UAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9L0R_029 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.2058

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

9L0R|1|B|A|486
9L0R|1|B|G|487
9L0R|1|B|A|488
9L0R|1|B|G|489
*
9L0R|1|B|U|501
9L0R|1|B|A|502
9L0R|1|B|A|503
9L0R|1|B|U|504

Current chains

Chain B

RNA (700-MER)

Nearby chains