IL_9L0R_080

3D structure

PDB id

9L0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA dodecamer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

CUUA*UUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9L0R_080 not in the Motif Atlas

Geometric match to IL_8P9A_462

Geometric discrepancy: 0.2647

The information below is about IL_8P9A_462

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

9L0R|1|E|C|528
9L0R|1|E|U|529
9L0R|1|E|U|530
9L0R|1|E|A|531
*
9L0R|1|E|U|548
9L0R|1|E|U|549
9L0R|1|E|C|550
9L0R|1|E|G|551

Current chains

Chain E

RNA (700-MER)

Nearby chains

Chain D

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA