IL_9LGI_002

3D structure

PDB id

9LGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a type II-D CRISPR-Cas9 in complex with single-guided RNA and double-stranded DNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

ACG*CCUCU

Length

8 nucleotides

Bulged bases

9LGI|1|B|C|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9LGI_002 not in the Motif Atlas

Geometric match to IL_8HNT_002

Geometric discrepancy: 0.1369

The information below is about IL_8HNT_002

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

9LGI|1|B|A|86
9LGI|1|B|C|87
9LGI|1|B|G|88
*
9LGI|1|B|C|110
9LGI|1|B|C|111
9LGI|1|B|U|112
9LGI|1|B|C|113
9LGI|1|B|U|114

Current chains

Chain B

sgRNA (156-MER)

Nearby chains

Chain A

HNH nuclease domain-containing protein