IL_9LMF_039

3D structure

PDB id

9LMF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA 3' domain decamer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

AGAG*UAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9LMF_039 not in the Motif Atlas

Geometric match to IL_6YML_002

Geometric discrepancy: 0.2604

The information below is about IL_6YML_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

9LMF|1|G|A|486
9LMF|1|G|G|487
9LMF|1|G|A|488
9LMF|1|G|G|489
*
9LMF|1|G|U|501
9LMF|1|G|A|502
9LMF|1|G|A|503
9LMF|1|G|U|504

Current chains

Chain G

RNA (700-MER)

Nearby chains