IL_9M0P_193

3D structure

PDB id

9M0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosome in complex with montanine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9M0P_193 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.1774

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

9M0P|1|S2|G|874
9M0P|1|S2|A|875
9M0P|1|S2|C|876
*
9M0P|1|S2|G|909
9M0P|1|S2|G|910
9M0P|1|S2|C|911

Current chains

Chain S2

18S ribosomal RNA|HOMO SAPIENS

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SH

40S ribosomal protein S7