IL_9M86_002

3D structure

PDB id

9M86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of SpMETTL16 kinase associated 1 domain in complex with U6 snRNA internal stem loop

Experimental method

X-RAY DIFFRACTION

Resolution

2.795 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9M86_002 not in the Motif Atlas

Geometric match to IL_8P9A_354

Geometric discrepancy: 0.1285

The information below is about IL_8P9A_354

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9M86|1|B|G|52
9M86|1|B|G|53
9M86|1|B|C|54
*
9M86|1|B|G|69
9M86|1|B|A|70
9M86|1|B|C|71

Current chains

Chain B

RNA (31-MER)

Nearby chains

Chain A

U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase