IL_9MDS_044

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGU*AUUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MDS_044 not in the Motif Atlas

Geometric match to IL_8CRE_417

Geometric discrepancy: 0.3762

The information below is about IL_8CRE_417

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9MDS|1|D|C|556
9MDS|1|D|G|557
9MDS|1|D|U|558
*
9MDS|1|D|A|572
9MDS|1|D|U|573
9MDS|1|D|U|574
9MDS|1|D|G|575

Current chains

Chain D

RNA (598-MER)

Nearby chains