IL_9MEE_195

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUU*AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MEE_195 not in the Motif Atlas

Geometric match to IL_4LFB_049

Geometric discrepancy: 0.3124

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_87975.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9MEE|1|K|U|434
9MEE|1|K|A|435
9MEE|1|K|U|436
9MEE|1|K|U|437
*
9MEE|1|K|A|459
9MEE|1|K|G|460

Current chains

Chain K

GOLLD RNA nanocage

Nearby chains