IL_9MEE_238
3D structure
- PDB id
- 9MEE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GOLLD RNA nanocage (env-38)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGAGG*UUUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9MEE_238 not in the Motif Atlas
- Geometric match to IL_5J7L_300
- Geometric discrepancy: 0.1644
- The information below is about IL_5J7L_300
- Detailed Annotation
- tSH-tWH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_38862.4
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9MEE|1|N|U|137
9MEE|1|N|G|138
9MEE|1|N|A|139
9MEE|1|N|G|140
9MEE|1|N|G|141
*
9MEE|1|N|U|149
9MEE|1|N|U|150
9MEE|1|N|U|151
9MEE|1|N|A|152
9MEE|1|N|G|153
Current chains
- Chain N
- GOLLD RNA nanocage
Nearby chains
- Chain H
- Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA
Coloring options: