IL_9MKK_001

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAA*UUA

Length

7 nucleotides

Bulged bases

9MKK|1|A|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_001 not in the Motif Atlas

Geometric match to IL_8CRE_130

Geometric discrepancy: 0.2382

The information below is about IL_8CRE_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9MKK|1|A|U|30
9MKK|1|A|G|31
9MKK|1|A|A|32
9MKK|1|A|A|33
*
9MKK|1|A|U|551
9MKK|1|A|U|552
9MKK|1|A|A|553

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12