IL_9MKK_046

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGCAUACAAAGAGAAG*CGGACCUCAUAAAGUGCG

Length

34 nucleotides

Bulged bases

9MKK|1|A|C|1249, 9MKK|1|A|A|1257, 9MKK|1|A|G|1278, 9MKK|1|A|A|1280, 9MKK|1|A|C|1281, 9MKK|1|A|U|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MKK|1|A|C|1243
9MKK|1|A|G|1244
9MKK|1|A|C|1245
9MKK|1|A|A|1246
9MKK|1|A|U|1247
9MKK|1|A|A|1248
9MKK|1|A|C|1249
9MKK|1|A|A|1250
9MKK|1|A|A|1251
9MKK|1|A|A|1252
9MKK|1|A|G|1253
9MKK|1|A|A|1254
9MKK|1|A|G|1255
9MKK|1|A|A|1256
9MKK|1|A|A|1257
9MKK|1|A|G|1258
*
9MKK|1|A|C|1277
9MKK|1|A|G|1278
9MKK|1|A|G|1279
9MKK|1|A|A|1280
9MKK|1|A|C|1281
9MKK|1|A|C|1282
9MKK|1|A|U|1283
9MKK|1|A|C|1284
9MKK|1|A|A|1285
9MKK|1|A|U|1286
9MKK|1|A|A|1287
9MKK|1|A|A|1288
9MKK|1|A|A|1289
9MKK|1|A|G|1290
9MKK|1|A|U|1291
9MKK|1|A|G|1292
9MKK|1|A|C|1293
9MKK|1|A|G|1294

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain G

Small ribosomal subunit protein uS7

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10

Chain M

Small ribosomal subunit protein uS13

Chain N

Small ribosomal subunit protein uS14