IL_9MKK_082

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_082 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2558

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9MKK|1|a|G|875
9MKK|1|a|C|876
9MKK|1|a|A|877
9MKK|1|a|A|878
9MKK|1|a|G|879
*
9MKK|1|a|C|898
9MKK|1|a|A|899
9MKK|1|a|A|900
9MKK|1|a|C|901
9MKK|1|a|C|902

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16