IL_9MKK_098

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

9MKK|1|a|U|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_098 not in the Motif Atlas

Geometric match to IL_7A0S_048

Geometric discrepancy: 0.1373

The information below is about IL_7A0S_048

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9MKK|1|a|C|1351
9MKK|1|a|U|1352
9MKK|1|a|A|1353
9MKK|1|a|A|1354
9MKK|1|a|G|1355
*
9MKK|1|a|C|1376
9MKK|1|a|G|1377
9MKK|1|a|A|1378
9MKK|1|a|U|1379
9MKK|1|a|G|1380

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2