IL_9MKK_106

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGUAGG*CUGAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_106 not in the Motif Atlas

Geometric match to IL_8ZA4_003

Geometric discrepancy: 0.3546

The information below is about IL_8ZA4_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9MKK|1|a|U|1474
9MKK|1|a|G|1475
9MKK|1|a|U|1476
9MKK|1|a|A|1477
9MKK|1|a|G|1478
9MKK|1|a|G|1479
*
9MKK|1|a|C|1512
9MKK|1|a|U|1513
9MKK|1|a|G|1514
9MKK|1|a|A|1515
9MKK|1|a|G|1516
9MKK|1|a|G|1517

Current chains

Chain a

23S rRNA

Nearby chains