IL_9MKK_108

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

9MKK|1|a|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_108 not in the Motif Atlas

Geometric match to IL_7DLZ_001

Geometric discrepancy: 0.2327

The information below is about IL_7DLZ_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9MKK|1|a|C|1489
9MKK|1|a|A|1490
9MKK|1|a|G|1491
*
9MKK|1|a|C|1499
9MKK|1|a|G|1500

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2