3D structure

PDB id
9MKK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of arbekacin bound Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AUA*UGUUU
Length
8 nucleotides
Bulged bases
9MKK|1|a|U|2491
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9MKK_135 not in the Motif Atlas
Geometric match to IL_7A0S_086
Geometric discrepancy: 0.1817
The information below is about IL_7A0S_086
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform with extra cWW
Motif group
IL_36931.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
23

Unit IDs

9MKK|1|a|A|2459
9MKK|1|a|U|2460
9MKK|1|a|A|2461
*
9MKK|1|a|U|2489
9MKK|1|a|G|2490
9MKK|1|a|U|2491
9MKK|1|a|U|2492
9MKK|1|a|U|2493

Current chains

Chain a
23S rRNA

Nearby chains

Chain l
50S ribosomal protein L16

Coloring options:


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