IL_9MKK_135

3D structure

PDB id

9MKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

9MKK|1|a|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MKK_135 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.1817

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

9MKK|1|a|A|2459
9MKK|1|a|U|2460
9MKK|1|a|A|2461
*
9MKK|1|a|U|2489
9MKK|1|a|G|2490
9MKK|1|a|U|2491
9MKK|1|a|U|2492
9MKK|1|a|U|2493

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16