IL_9MNC_005

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GCC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_005 not in the Motif Atlas

Geometric match to IL_8GLP_003

Geometric discrepancy: 0.0505

The information below is about IL_8GLP_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9MNC|1|L1|G|139
9MNC|1|L1|C|140
9MNC|1|L1|C|141
*
9MNC|1|L5|G|16
9MNC|1|L5|A|17
9MNC|1|L5|C|18

Current chains

Chain L1

5.8S rRNA

Chain L5

28S rRNA

Nearby chains

Chain LN

Large ribosomal subunit protein eL15

Chain LO

Large ribosomal subunit protein uL29

Chain Ln

Large ribosomal subunit protein uL23