IL_9MNC_028

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_028 not in the Motif Atlas

Homologous match to IL_8GLP_030

Geometric discrepancy: 0.3492

The information below is about IL_8GLP_030

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9MNC|1|L5|G|497
9MNC|1|L5|C|498
9MNC|1|L5|G|499
*
9MNC|1|L5|C|655
9MNC|1|L5|C|656
9MNC|1|L5|C|657

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4