IL_9MNC_068

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UUGG*(OMU)CA

Length

7 nucleotides

Bulged bases

9MNC|1|L5|U|1757

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_068 not in the Motif Atlas

Geometric match to IL_8GLP_308

Geometric discrepancy: 0.2536

The information below is about IL_8GLP_308

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9MNC|1|L5|U|1756
9MNC|1|L5|U|1757
9MNC|1|L5|G|1758
9MNC|1|L5|G|1759
*
9MNC|1|L5|OMU|1773
9MNC|1|L5|C|1774
9MNC|1|L5|A|1775

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

Large ribosomal subunit protein uL18

Chain Lz

Large ribosomal subunit protein uL16