IL_9MNC_114

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MNC_114 not in the Motif Atlas

Homologous match to IL_9H3G_097

Geometric discrepancy: 0.1191

The information below is about IL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.4

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9MNC|1|L5|PSU|3715
9MNC|1|L5|C|3716
9MNC|1|L5|A|3717
9MNC|1|L5|A2M|3718
9MNC|1|L5|A|3719
9MNC|1|L5|G|3720
9MNC|1|L5|U|3721
*
9MNC|1|L5|A|3732
9MNC|1|L5|A|3733
9MNC|1|L5|PSU|3734
9MNC|1|L5|G|3735
9MNC|1|L5|A|3736
9MNC|1|L5|A|3737
9MNC|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL2

Chain Le

Large ribosomal subunit protein eL42

Chain Li

Large ribosomal subunit protein eL36