IL_9MOR_042

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9MOR|1|1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MOR_042 not in the Motif Atlas

Homologous match to IL_9DFE_046

Geometric discrepancy: 0.2119

The information below is about IL_9DFE_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9MOR|1|1|C|1208
9MOR|1|1|U|1209
9MOR|1|1|G|1210
9MOR|1|1|C|1211
9MOR|1|1|G|1212
9MOR|1|1|A|1213
9MOR|1|1|A|1214
9MOR|1|1|G|1215
*
9MOR|1|1|U|1234
9MOR|1|1|G|1235
9MOR|1|1|G|1236
9MOR|1|1|A|1237
9MOR|1|1|G|1238

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20