IL_9MOR_118

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9MOR|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MOR_118 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2946

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9MOR|1|2|G|147
9MOR|1|2|G|148
9MOR|1|2|A|149
9MOR|1|2|U|150
9MOR|1|2|A|151
9MOR|1|2|A|152
9MOR|1|2|C|153
*
9MOR|1|2|G|168
9MOR|1|2|C|169
9MOR|1|2|U|170
9MOR|1|2|A|171
9MOR|1|2|A|172
9MOR|1|2|U|173
9MOR|1|2|A|174
9MOR|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20