IL_9MOR_120

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9MOR|1|2|U|244, 9MOR|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MOR_120 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1487

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

9MOR|1|2|G|242
9MOR|1|2|A|243
9MOR|1|2|U|244
9MOR|1|2|U|245
9MOR|1|2|A|246
9MOR|1|2|G|247
*
9MOR|1|2|C|277
9MOR|1|2|G|278
9MOR|1|2|A|279
9MOR|1|2|C|280
9MOR|1|2|G|281
9MOR|1|2|A|282
9MOR|1|2|U|283
9MOR|1|2|C|284

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain v

Small ribosomal subunit protein uS17