IL_9MOR_129

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MOR_129 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.442

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9MOR|1|2|G|450
9MOR|1|2|A|451
9MOR|1|2|A|452
9MOR|1|2|G|453
9MOR|1|2|G|454
9MOR|1|2|G|455
*
9MOR|1|2|C|477
9MOR|1|2|A|478
9MOR|1|2|U|479
9MOR|1|2|U|480
9MOR|1|2|G|481
9MOR|1|2|A|482
9MOR|1|2|C|483

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16