3D structure

PDB id
9MOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Damaged 70S ribosome with PrfH bound
Experimental method
ELECTRON MICROSCOPY
Resolution
2.65 Å

Loop

Sequence
UACAAAG*CAUAAAG
Length
14 nucleotides
Bulged bases
9MOR|1|2|U|1286
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9MOR_160 not in the Motif Atlas
Homologous match to IL_4LFB_051
Geometric discrepancy: 0.3211
The information below is about IL_4LFB_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_12056.1
Basepair signature
cWW-L-R-R-bif-cWW
Number of instances in this motif group
2

Unit IDs

9MOR|1|2|U|1247
9MOR|1|2|A|1248
9MOR|1|2|C|1249
9MOR|1|2|A|1250
9MOR|1|2|A|1251
9MOR|1|2|A|1252
9MOR|1|2|G|1253
*
9MOR|1|2|C|1284
9MOR|1|2|A|1285
9MOR|1|2|U|1286
9MOR|1|2|A|1287
9MOR|1|2|A|1288
9MOR|1|2|A|1289
9MOR|1|2|G|1290

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain l
30S ribosomal protein S7
Chain n
Small ribosomal subunit protein uS9
Chain o
Small ribosomal subunit protein uS10
Chain s
Small ribosomal subunit protein uS14

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