IL_9MOR_167

3D structure

PDB id

9MOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(5MC)AC*GA(A3P)G

Length

7 nucleotides

Bulged bases

9MOR|1|2|A3P|1493

QA status

Modified nucleotides: 5MC, A3P

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MOR_167 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2473

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9MOR|1|2|5MC|1407
9MOR|1|2|A|1408
9MOR|1|2|C|1409
*
9MOR|1|2|G|1491
9MOR|1|2|A|1492
9MOR|1|2|A3P|1493
9MOR|1|2|G|1494

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 7

mRNA

Chain A

Peptide chain release factor H

Chain q

Small ribosomal subunit protein uS12