IL_9MQ4_103

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_103 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.0904

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9MQ4|1|1|C|2652
9MQ4|1|1|U|2653
9MQ4|1|1|A|2654
9MQ4|1|1|G|2655
9MQ4|1|1|U|2656
9MQ4|1|1|A|2657
9MQ4|1|1|C|2658
*
9MQ4|1|1|G|2663
9MQ4|1|1|G|2664
9MQ4|1|1|A|2665
9MQ4|1|1|C|2666
9MQ4|1|1|C|2667
9MQ4|1|1|G|2668

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

Large ribosomal subunit protein uL6