IL_9MQ4_124

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9MQ4|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_124 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1329

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9MQ4|1|2|G|147
9MQ4|1|2|G|148
9MQ4|1|2|A|149
9MQ4|1|2|U|150
9MQ4|1|2|A|151
9MQ4|1|2|A|152
9MQ4|1|2|C|153
*
9MQ4|1|2|G|168
9MQ4|1|2|C|169
9MQ4|1|2|U|170
9MQ4|1|2|A|171
9MQ4|1|2|A|172
9MQ4|1|2|U|173
9MQ4|1|2|A|174
9MQ4|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20