IL_9MQ4_137
3D structure
- PDB id
- 9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Damaged 70S ribosome with PrfH bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9MQ4|1|2|A|532, 9MQ4|1|2|U|534, 9MQ4|1|2|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9MQ4_137 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.2643
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9MQ4|1|2|G|515
9MQ4|1|2|PSU|516
9MQ4|1|2|G|517
9MQ4|1|2|C|518
9MQ4|1|2|C|519
9MQ4|1|2|A|520
9MQ4|1|2|G|521
*
9MQ4|1|2|C|528
9MQ4|1|2|G|529
9MQ4|1|2|G|530
9MQ4|1|2|U|531
9MQ4|1|2|A|532
9MQ4|1|2|A|533
9MQ4|1|2|U|534
9MQ4|1|2|A|535
9MQ4|1|2|C|536
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain A
- Peptide chain release factor H
- Chain h
- 30S ribosomal protein S3
- Chain i
- 30S ribosomal protein S4
- Chain q
- Small ribosomal subunit protein uS12
Coloring options: