IL_9MQ4_150

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MQ4_150 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0882

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

9MQ4|1|2|G|887
9MQ4|1|2|G|888
9MQ4|1|2|A|889
9MQ4|1|2|G|890
9MQ4|1|2|U|891
9MQ4|1|2|A|892
9MQ4|1|2|C|893
9MQ4|1|2|G|894
*
9MQ4|1|2|U|905
9MQ4|1|2|A|906
9MQ4|1|2|A|907
9MQ4|1|2|A|908
9MQ4|1|2|A|909
9MQ4|1|2|C|910

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12