IL_9MR4_040

3D structure

PDB id

9MR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC: Ribosome nascent chain complex(Oxa1L)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

9MR4|1|5|C|1214, 9MR4|1|5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MR4_040 not in the Motif Atlas

Geometric match to IL_9H3G_156

Geometric discrepancy: 0.3198

The information below is about IL_9H3G_156

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9MR4|1|5|C|1082
9MR4|1|5|U|1083
9MR4|1|5|C|1084
*
9MR4|1|5|G|1213
9MR4|1|5|C|1214
9MR4|1|5|C|1215
9MR4|1|5|C|1216
9MR4|1|5|G|1217

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

uL30

Chain b

Large ribosomal subunit protein eL29