IL_9MR4_044

3D structure

PDB id

9MR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC: Ribosome nascent chain complex(Oxa1L)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MR4_044 not in the Motif Atlas

Homologous match to IL_9H3G_022

Geometric discrepancy: 0.31

The information below is about IL_9H3G_022

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9MR4|1|5|G|1173
9MR4|1|5|G|1174
9MR4|1|5|A|1175
*
9MR4|1|5|U|1186
9MR4|1|5|G|1187
9MR4|1|5|C|1188

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL18