IL_9MR4_064

3D structure

PDB id

9MR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC: Ribosome nascent chain complex(Oxa1L)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MR4_064 not in the Motif Atlas

Homologous match to IL_9AXU_038

Geometric discrepancy: 0.092

The information below is about IL_9AXU_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9MR4|1|5|A|1737
9MR4|1|5|A|1738
*
9MR4|1|5|U|1790
9MR4|1|5|U|1791
9MR4|1|5|U|1792

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

Large ribosomal subunit protein uL18

Chain I

60S ribosomal protein L10

Chain T

eL21