IL_9MR4_223

3D structure

PDB id

9MR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC: Ribosome nascent chain complex(Oxa1L)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9MR4_223 not in the Motif Atlas

Homologous match to IL_9PN5_194

Geometric discrepancy: 0.0636

The information below is about IL_9PN5_194

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

7

Unit IDs

9MR4|1|K|G|1168
9MR4|1|K|G|1169
9MR4|1|K|A|1170
9MR4|1|K|G|1171
9MR4|1|K|U|1172
9MR4|1|K|A|1173
9MR4|1|K|U|1174
9MR4|1|K|G|1175
*
9MR4|1|K|U|1186
9MR4|1|K|G|1187
9MR4|1|K|A|1188
9MR4|1|K|A|1189
9MR4|1|K|A|1190
9MR4|1|K|C|1191

Current chains

Chain K

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain VV

uS12

Chain n

eL41